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691. pISTil - pISTil (a Pipeline for Interaction Sequence Tag identification and analysis) is a collection of scripts, and programs - running on both Linux and MacOS X systems - for fast analysis of large yeast two-hybrid sequence datasets.

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692. Plasmidb - "Plasmidb" is a database management system (RDMS) used to manipulate, view and store molecular biology information rapidly and easily. Editable information includes: constructed plasmids, clones, standard vectors, primers, antibiotics, enzymes and more

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693. platestats - The platestats software aims to provide a convenient solution for analyzing the results of biological assays performed in 96- and 384-well plates.

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694. POA - POA is Partial Order Alignment, a fast program for multiple sequence alignment in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment.

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695. PPlot - PPLOT is a small software package for the multiple testing problem. It contains 2 routines to be used for the correction of p-values derived from multiple univariate statistical tests (t-tests, F-tests etc.).

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696. Praxiteles - Praxiteles is a cross-platform interactive visualization tool for comparative genome map data. It is particularly well-suited to viewing multiple related genomes or chromosome segments that have highly diverged gene content and order.

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697. Prequips - A Java-based tool to visualize, integrate and analyze LC-MS/MS proteomics data.

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698. PRIDE - PRIDE: PRoteomics IDEntifications database. Please note that the PRIDE project has relocated to http://code.google.com/p/ebi-pride

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699. PRIDE venndiagram experimcomparison tool - Venndiagram comparison for ProteinExperiments in the PRIDE Database

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700. Primer3 - PCR primer design tool - Design PCR primers from DNA sequence. Widely used (190k Google hits for "primer3"). From mispriming libraries to sequence quality data to the generation of internal oligos, primer3 does it. C&perl. Developers/testers/documenters needed.

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