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781. Scalable Search Model - ssearchmodel - is the Unix name for the Scalable Search Model it is originally a text based information retrieval system. It is written in PHP and uses MySQL. The open source community can add to it and allow it to grow into more.

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782. Scanner based Bioparsers - Parsers for biological data based on scanner generators like Flex (C), Re2c(C), Jflex (Java) and Ifickle (Tcl). This scanner generators are providing easier maintainance, development and higher speed than hand written scanners. Scanner output is SQL.

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783. SchemaWalker - The SchemaWalker is a Java application able to read a any schema and produce XForms web pages for user selected nodes grouped into webpages to allow editing of XML data files.

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784. Schneider Suite - The Schneider Suite. A Graphically Driven Program and Application Programming Interface for Molecular Biology and Bioinformatic Sequence Analysis.

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785. SciArchive - SciArchive is a cross-platform client-server application that allows you to store and easily access personal or laboratory scientific data( scientific articles, experiment protocols, multiple alignments, sequences, etc. ).

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786. SciFOAF - Urbigene contains SciFOAF and MyFOAFExplorer, two tools used to build a scientific FOAF network from NCBI pubmed and to browse it.

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787. Screening Assistant 2 - ScreeningAssistant 2 is a software based on the CDK and JOELib and dedicated, among other, to the management of chemical databases, navigation through chemical space, calculation and storage of molecular descriptors, and diverse compound selection.

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788. SDFCherry - SDFCherry is a command-line program that searches for textual matches in molecular structure files of SDF format and outputs the structures that match. Optionally adds a data field to the matched structures, e.g., biological activity. Useful for QSAR.

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789. Semantic Web Ontology Editor for Protege - ** IMPORTANT NOTICE ** 10 Feb 2006 Code is being moved to the SMI subversion repository (http://smi-protege.stanford.edu/svn/owl/trunk/) Project will continue to be open source. ProtegeOWL info at: http://protege.stanford.edu/overview/protege-owl.html

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790. semanticSBML - Create, check, annotate, merge SBML (System Biology Markup Lanugage) models. The program includes a graphical user interface. For tool developers a programming interface is provided. It features advanced functions to edit MIRIAM and SBO terms.

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