948 projects in result set. Projects sorted by: Ranking (Top Ranked First)
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1. 3D Genome Tuner - 3D Genome Tuner draws circular genome map and enables viewing multi-genomes in 3D context. It also provides genome analysis and sequence alignment, making it a powerful tool in genome studies and demonstrations.
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2. 3D Viewer for Phylogenetic Trees - A 3D viewer for phylogenetic trees. Speciation events are displayed in the plane according to the species tree, while duplication events are displayed in the other dimension.
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4. 5DT DataGlove Driver - A driver for the 5DT datagloves written in pure C++ using only the STL. Meant to be cross-platform, but written on and developed for IRIX sytems.
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5. A database for musem specimens - A Content Management System for collection data of taxonomic specimens. Organize your museum specimens, collection vouchers in one user-friendly database.
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6. AAARF Genomic Repeat Investigation - AAARF, written in PERL and with numerous adjustable parameters, identifies sequence overlaps in small shotgun sequence datasets and walks them out to create long pseudomolecules representing the most abundant repeats in a genome.
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7. ABAC - Algorithmic Based Automatic Contiguation of Shot-gun sequences (ABACAS) is an integrated platform for quickly contiguating reference based assemblies.
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8. ABACAS - Algorithm Based Automatic Contiguation of Assembled sequences (ABACAS) is an integrated platform for quickly contiguating reference based assemblies.
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9. Abeel Java Toolkit (AJT) - AJT is a set of utility classes for Java for handling some bioinformatics data, graphics file export, GUI widgets, and classes that should long have been added to the official Java API.
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10. aCell - a framework to build data-driven models of biological cells
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11. AcidMiner - Toolkit to examine the topology of a phylogenetic tree, place amino acid substitutions on specific branches, polarize them and compare amino acid sequences of homologous proteins to answer a wide range of questions about protein evolution.
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12. Adamant - Adamant is a java application for annotation of microarray array designs. The software enables MIAME-compliant annotation of sequences spotted onto arrays and can produce output files in MAGE-ML and other data formats used by public microarray data repos
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13. ADF MAGE-ML Tool - In order to facilitate standardization and exchange of microarray layout, this project provides an ADF (Array design File))/MAGE-ML converter.
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14. Adsat -- Sequence Analysis Tool - Automated Database-lookup and Sequence Analysis Tool for use specifically with BioPython. Used for obtaining Sequence and other Data from online databases and processing the data using open bioinformatics tools like BLAST and MEME.
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15. Agent-Based Multiscale Tissue Model - Agent-based multiscale model of cancer proliferation dynamics
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16. AgentCell - AgentCell is an agent-based model of cellular biochemical processes and biological behavior.
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17. AgentQ - AgentQ is a project aimed at the development of virtual agents that mimic human intelligence and attributes (such as language or commonsense), as well as environments for these agents to learn and function in.
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18. aisconvert - Toolkit for processing genetic data in RAW (23andme) format. Currently supports (command-line): Half-IBD (Identity by descent) aka HIRs - between 2 or any number of files (in distances and cM); RAW2PED conversion; regions of homozygousity
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19. AITools - This project is aimed at creating a set of highly universal AI tools to be used in AI modelling. So far the subject area includes: Neural Networks, Fuzzy Logic, Biological Methods, Genetic Computing. New tools will be devised as the project goes on.
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20. Akiva Discovery Manager - Discovery Manager for integrating components on CSF.
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948 projects in result set. Projects sorted by: Ranking (Top Ranked First)
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