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         Bio-Informatics
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948 projects in result set. Projects sorted by: Ranking (Top Ranked First)
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901. trialCODE - Trial Criteria Online Data Entry (trialCODE): a Java-based user interface that codifies eligibility requirements used to automate the screening of potential subjects to clinical trials. Used for caMATCH screening engine on BreastCancerTrials.org site.

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902. TRMSim-WSN - TRMSim-WSN (Trust and Reputation Models Simulator for Wireless Sensor Networks) is a Java-based simulator aimed to test Trust and Reputation models for WSNs. It provides several Trust and Reputation models and new ones can be easily added.

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903. twoddb - Software for storing and distributing proteomics data

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904. UCSF NOMAD - NOMAD is a system for supporting microarray experiments. it facilitates the archival and retrieval of experiment results, and is being developed to provide integrated analytical tools.

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905. UniPrime - Primer design is a critical step in all type of PCR and sequence approaches in comparative genetics to ensure specificity and efficiency of a target amplicon. uniPrime program allows users to automatically design large sets of cross-species primers.

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906. VANESA - This tool is a platform-independent software to create individual pathways and to examine biological networks of distributed, heterogeneous data sources, e.g. KEGG, BRENDA.

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907. VANTED - VANTED stands for Visualization and Analysis of Networks containing Experimental Data

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908. VariScan - VariScan is a software package for the analysis of DNA sequence polymorphisms at the whole genome scale.

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909. VarScan - Variant detection in massively parallel sequencing data of individual, pooled, and tumor-normal samples. Detects SNPs and indels from the "Pileup" output of SAMtools.

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910. Vascular Network Toolkit for ImageJ - A plugin package for ImageJ that assists with quantification and characterization of vascular networks. The tool regularizes lighting, segments the vessels, and generates a skeletal description that reflects the biological structures of interest.

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911. VCAKE - VCAKE is a genetic sequence assembler capable of assembling millions of small nucleotide reads even in the presence of sequencing error. This software is currently geared towards de novo assembly of Illumina's Solexa Sequencing data.

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912. vcftools - A set of tools written in C++ for working with VCF files from the 1000 Genomes Project

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913. Vektor - Vektor (VectorEditingKitToOpenResearch) is a vector / plasmid editing program similar to commercial/non-free applications like Clonemanager, ApE, pDraw32, Plasmapper etc. Primarily it will be a userfriendly web based GUI for many features of BioPython.

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914. VELMA - VELMA stands for Visualization & Exploration of Large Multiple sequence Alignments. VELMA is a Java tool for visualizing alignments of large numbers of biological sequences that exceed the capabilities of existing software.

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915. versusSNP - The program versusSNP is a flexible tool for mining SNPs between two close related genomes. First, we align all the orthologous genes and select SNPs, then the SNPs are separated into categories based on their mutation types.

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916. Virtual Cell - Open Source home for the Virtual Cell platform (VCell) - core modules, plug-ins, and tools. See http://vcell.org/ for details of current version (free, but non-Open Source)

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917. Vitalea - An artificial life and cellular automata simulator, inspired by Conway's Game of Life.

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918. VitaPad - VitaPad is an application used to visualize biological pathways and map experimental data to them

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919. VMC-MSRC Bioinformatic Software - Here you will find software and documentation for bioinformatic tools developed and used at the Vanderbilt Medical Center's Mass Spectrometry Research Center. Tools that are awaiting publication may not be available to the public yet.

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920. VPMB Decompression Software - This software is a straight translation from Eric Baker's VPMB Fortran Code.

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921. VRML97_Import - The VRML97-Import-Script is a Python-Script, that extends the capabilities of Blender to import VRML97-Files. It supports Blender since version 2.42.

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922. Wattos - Wattos is a collection of mostly Java programs for Structural Biology and NMR Spectroscopy. It's programs analyze, annotate, parse, archive, and disseminate experimental NMR data deposited by authors world wide into the PDB and BMRB.

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923. Wavelets At Work - Wavelets At Work is a graphical tool (written in java) using wavelets in order to detect discontinuity of an input signal.

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924. WayFarer - A desktop environment for the management and integration of scientific knowledge, with import/export to the Semantic Web (i.e. RDF, OWL). Also serves as a platform for developing applications based on that knowledge.

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925. Web robot generator - Sight provides a friendly interface to create and connect agents for bioinformatics. The workflow supports multiple responses to a single request, structure transforms, filters and request history access.Can talk with ordinary http servers (get and post)

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926. WGAViewer - WGAViewer is a suite of JAVA software tools that provides a user-friendly interface to annotate, visualize, and help interpret the full set of P values emerging from a whole genome association (WGA) study.

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927. William J. Dreyer Tapestry - A colorized interactive dotplot program designed for pair-wise comparisons of RNA & DNA. The original idea was from the mind of late Prof. William J. Dreyer of Caltech. The idea is to be able to see the "tapestry" of life, which comes alive with color.

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928. WilmaScope 3D Graph Visualizatio - A Java software for 3D visualization of graphs/networks. It implements many graph layout algorithms (such as force-directed methods), graph generators (such as scale-free networks) and graph modifiers. Most functions can be accessed through its GUI.

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929. Winnow PubMed Client - Winnow is a graphical application for importing and organising articles from PubMed. It gives access to abstracts, full text and allows references to be saved. It can also predict what a user will find interesting through adaptive filtering.

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930. Woldlab BioHub - The goal is twofold: 1) Allow Biologists to ask (multi-)genome-scale questions in a standard way of very diverse biological data by the spatial relationships of DNA features. 2) Make it easier for programmers to write large scale bioinformatic tools.

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931. wxGenebee - The set of tools for biopolymer sequence analysis together with GUI to work with biopolymer sequence databases. The tools include pairwise and multiple alignment, philogenetic tree construction and other.

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932. XAStudio - XAS is a software with graphical user interface to performan analysis of data generated by a high-throughput expression cloning technology using gene expression microarrays.

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933. Xholon - The Xholon project explores: software as systems of linked nodes, organized hierarchically. The Xholon toolkit supports this back-to-basics approach, and demonstrates practical benefits through examples from numerous domains.

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934. Xipp - EXtensible Instrument Processing Protocol (XIPP) is used to query, configure, and stream data between XIPP-enabled instruments and personal computers on dedicated instrument networks using UDP packets. Cross-platform, C/C++.

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935. XML tree viewer component - Universal java component to display content and structure of the XML document. Bioinformatics.

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936. XMLPipeDB - XMLPipeDB is a suite of tools for building relational databases from XML sources with minimal manual processing of the data. While the applicability is general, our motivation was to facilitate the management of biological data from different sources.

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937. XNBC: neurobiology simulation tool - XNBC is a full featured application for computer naive neuroscientists. It simulates biological neural networks using graphic tools to edit neurons and networks, to run the simulation and to analyze results. Written in C, it runs on Unix and Windows.

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938. XQTav - In silico experiments. Express Taverna's workflows using XQuery. Integrates with Taverna, provides automated XQuery generation from SCUFL. A standard Taverna processor that runs XQuery. Easy XML transformations inside Taverna workflows.

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939. XStar - A Collection of STAR/CIF processing libraries and related tools, including sub-projects: AStar, TEStar and others...

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940. yawn - Yawn: Yet Another W* Network: a java framework for developing, training and testing neural networks independently of the model and test environment.

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941. Yawni - Yawni is a pure Java object-oriented interface to the WordNet database of lexical relationships. This is the project formerly known as "JWordNet".

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942. YeastsIdentification - The YeastsIdentification is a Java based application for searching for unique DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).

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943. YUMMI - Inter University Multi-Modal Imaging

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944. Zherlock - A general data analysis tool - Zherlock has now changed name to SciCraft and no longer hosted on sourceforge. Visit our new site at http://www.scicraft.org

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945. Zodiac - Zodiac is a Molecular Modelling suite for drug design. Its features include support for haptic devices and nintendo wiimote fully undoable command list, MMFF94 implementation, POVRAY output.

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946. Zoomable Sequence Alignment Editor - ZAE is a Zoomable multiple sequence Alignment Editor

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947. ZTUS - Managing Medical Insults.

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948. Zyxware Health Monitoring System - This is a web based disease monitoring for monitoring diseases like chikungunya, malaria - reported by hospitals in a district, county, state or country. There is a reporting & analysis module and a GIS module which displays the data using google maps.

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948 projects in result set. Projects sorted by: Ranking (Top Ranked First)
Select a page:   Previous   1   5   10   15   18   19

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