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948 projects in result set. Projects sorted by: Ranking (Top Ranked First)
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781. Scalable Search Model - ssearchmodel - is the Unix name for the Scalable Search Model it is originally a text based information retrieval system. It is written in PHP and uses MySQL. The open source community can add to it and allow it to grow into more.


  • Topic: Medical Science Apps., Visualization, Mathematics, Information Analysis, Bio-Informatics, Indexing/Search
  • Programming Language: PHP
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU Library or Lesser General Public License (LGPL), GNU General Public License (GPL)
  • Intended Audience: Education, Government, Healthcare Industry, Information Technology, Science/Research, Developers
  • Development Status: 3 - Alpha
  • Database Environment: MySQL

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782. Scanner based Bioparsers - Parsers for biological data based on scanner generators like Flex (C), Re2c(C), Jflex (Java) and Ifickle (Tcl). This scanner generators are providing easier maintainance, development and higher speed than hand written scanners. Scanner output is SQL.

Click here to download.  
  • Topic: Code Generators, Information Analysis, Bio-Informatics
  • User Interface: Command-line
  • Programming Language: Tcl, Java, C, Perl
  • Operating System: OS Independent (Written in an interpreted language)
  • License: BSD License
  • Intended Audience: Science/Research
  • Development Status: 4 - Beta
  • Database Environment: SQL-based, Flat-file

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783. SchemaWalker - The SchemaWalker is a Java application able to read a any schema and produce XForms web pages for user selected nodes grouped into webpages to allow editing of XML data files.


  • Topic: Text Processing, Bio-Informatics
  • User Interface: Java Swing
  • Programming Language: Java
  • Operating System: WinXP, Vista, OS X, Linux
  • License: Apache License V2.0
  • Intended Audience: Advanced End Users
  • Development Status: 5 - Production/Stable

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784. Schneider Suite - The Schneider Suite. A Graphically Driven Program and Application Programming Interface for Molecular Biology and Bioinformatic Sequence Analysis.


  • Topic: Bio-Informatics
  • User Interface: Tk
  • Translations: English
  • Programming Language: Python
  • Operating System: All 32-bit MS Windows (95/98/NT/2000/XP), All BSD Platforms (FreeBSD/NetBSD/OpenBSD/Apple Mac OS X), All POSIX (Linux/BSD/UNIX-like OSes), OS Independent (Written in an interpreted language), OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Advanced End Users, Developers, End Users/Desktop, Science/Research
  • Development Status: 2 - Pre-Alpha

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785. SciArchive - SciArchive is a cross-platform client-server application that allows you to store and easily access personal or laboratory scientific data( scientific articles, experiment protocols, multiple alignments, sequences, etc. ).


  • Topic: Database, Bio-Informatics, Molecular Science
  • User Interface: Java Swing, Web-based
  • Translations: English, Russian, German
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 1 - Planning
  • Database Environment: MySQL

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786. SciFOAF - Urbigene contains SciFOAF and MyFOAFExplorer, two tools used to build a scientific FOAF network from NCBI pubmed and to browse it.


  • Topic: Visualization, Bio-Informatics
  • User Interface: Java Swing
  • Translations: English
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Information Technology, Healthcare Industry, Non-Profit Organizations, Science/Research
  • Development Status: 4 - Beta

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787. Screening Assistant 2 - ScreeningAssistant 2 is a software based on the CDK and JOELib and dedicated, among other, to the management of chemical databases, navigation through chemical space, calculation and storage of molecular descriptors, and diverse compound selection.


  • Topic: Information Analysis, Visualization, Molecular Science, Chemistry, Bio-Informatics
  • User Interface: Java Swing
  • Translations: English
  • Programming Language: Java
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU Library or Lesser General Public License (LGPL), GNU General Public License (GPL)
  • Intended Audience: Science/Research, Healthcare Industry
  • Development Status: 1 - Planning
  • Database Environment: MySQL, JDBC, SQL-based

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788. SDFCherry - SDFCherry is a command-line program that searches for textual matches in molecular structure files of SDF format and outputs the structures that match. Optionally adds a data field to the matched structures, e.g., biological activity. Useful for QSAR.


  • Topic: Molecular Science, Chemistry, Bio-Informatics
  • User Interface: Command-line
  • Translations: English
  • Programming Language: C++
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, Advanced End Users
  • Development Status: 4 - Beta

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789. Semantic Web Ontology Editor for Protege - ** IMPORTANT NOTICE ** 10 Feb 2006 Code is being moved to the SMI subversion repository (http://smi-protege.stanford.edu/svn/owl/trunk/) Project will continue to be open source. ProtegeOWL info at: http://protege.stanford.edu/overview/protege-owl.html


  • Topic: Artificial Intelligence, Bio-Informatics, Information Analysis, Visualization
  • User Interface: Cocoa (MacOS X), Win32 (MS Windows), Gnome, KDE
  • Translations: English
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Mozilla Public License 1.1 (MPL 1.1)
  • Intended Audience: Developers, End Users/Desktop, Healthcare Industry, Information Technology, Science/Research, Education
  • Development Status: 5 - Production/Stable

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790. semanticSBML - Create, check, annotate, merge SBML (System Biology Markup Lanugage) models. The program includes a graphical user interface. For tool developers a programming interface is provided. It features advanced functions to edit MIRIAM and SBO terms.

Click here to download.  
  • Topic: Bio-Informatics, Visualization
  • User Interface: Console/Terminal, Qt
  • Programming Language: Python
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License version 3.0 (GPLv3)
  • Intended Audience: End Users/Desktop, Science/Research, Developers
  • Development Status: 5 - Production/Stable

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948 projects in result set. Projects sorted by: Ranking (Top Ranked First)
Select a page:   Previous   1   5   10   15   20   25   30   35   40   45   50   55   60   65   70   75   78   79   80   85   90   95   Next

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