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         Bio-Informatics
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948 projects in result set. Projects sorted by: Ranking (Top Ranked First)
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181. Clinical Systems Validation Documents - Gestalt Biotec Corporation plans to release a set of drug-development system validation documents based upon the system development lifecycle model. These documents may be useful as examples to help validate your application in compliance with FDA regs.

Click here to download.  
  • Topic: Medical Science Apps., Bio-Informatics
  • Translations: English
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Public Domain
  • Intended Audience: Healthcare Industry, Developers, Science/Research, Information Technology
  • Development Status: 3 - Alpha

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182. ClinStudyWeb - ClinStudyWeb is designed to provide a flexible infrastructure for managing patient and assay data from clinical studies. It uses a plugin system for study-specific web forms and arbitrarily complex test classifiers, and supports XML import/export.


  • Topic: Bio-Informatics, Medical Science Apps., Front-Ends
  • User Interface: Web-based
  • Programming Language: Perl, JavaScript, S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Advanced End Users, Developers, End Users/Desktop, Healthcare Industry, Science/Research
  • Development Status: 4 - Beta
  • Database Environment: Project is a database management tool, Perl DBI/DBD

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183. Cloe - Cloe (Closure Editor) is a graphical, Java based tool used for editing contigs, resolving contig features, and closing both sequencing and physical gaps.


  • Topic: Bio-Informatics
  • User Interface: Java Swing
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 5 - Production/Stable
  • Database Environment: JDBC

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184. Cluster Networks - Cluster Networks are a new style of neural simulation / neural network modeling, that models networks of neural populations ("clusters") that transform and transmit information using precisely-timed, graded bursts ("pulses" or "volleys") of firing.

Click here to download.  
  • Topic: Artificial Intelligence, Bio-Informatics, Distributed Computing
  • Translations: English
  • Programming Language: C++
  • Operating System: OS Independent (Written in an interpreted language), All 32-bit MS Windows (95/98/NT/2000/XP)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Developers, Science/Research
  • Development Status: 4 - Beta

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185. CNV Workshop - CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV).


  • Topic: Bio-Informatics
  • User Interface: Web-based
  • Programming Language: Java, Perl, S/R
  • Operating System: All POSIX (Linux/BSD/UNIX-like OSes), All BSD Platforms (FreeBSD/NetBSD/OpenBSD/Apple Mac OS X), OS Portable (Source code to work with many OS platforms), 32-bit MS Windows (NT/2000/XP)
  • License: Affero GNU Public License
  • Intended Audience: Science/Research, Healthcare Industry, Information Technology, Developers, Advanced End Users
  • Development Status: 5 - Production/Stable
  • Database Environment: MySQL, JDBC, Perl DBI/DBD

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186. CoactivationMap - CoactivationMap is a graphic user interface to browse through a map of functional co-activations of the human brain. Click on a region, and observe which other regions are likely to be connected

Click here to download.  
  • Topic: Visualization, Medical Science Apps., Bio-Informatics
  • User Interface: Cocoa (MacOS X)
  • Programming Language: Objective C, C
  • Operating System: OS X
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 3 - Alpha

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187. COB Editor - COB editor is a collaborative editor for biological ontology (e.g., Gene Ontology) building. Building on the idea of modular ontology from KR research, it supports multiple people to work on the same ontology.

Click here to download.  
  • Topic: Bio-Informatics
  • User Interface: Java Swing
  • Programming Language: Java
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Developers
  • Development Status: 2 - Pre-Alpha
  • Database Environment: PostgreSQL (pgsql), JDBC

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188. CoCAS - CoCAS: A ChIP-on-Chip Analysis Suite Written by : Touati Benoukraf, Pierre Cauchy, Romain Fenouil.


  • Topic: Bio-Informatics
  • Operating System: OS X, Vista, Linux, WinXP
  • License: Public Domain, GNU General Public License (GPL)
  • Development Status: 6 - Mature

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189. Codons - When planning heterologous expression of a gene, it is necessary to assess the number of rare codons that can be encountered in the gene. This program helps you find out.

Click here to download.  
  • Topic: Bio-Informatics
  • User Interface: Command-line, Tk
  • Programming Language: Perl
  • Operating System: OS Independent (Written in an interpreted language), All 32-bit MS Windows (95/98/NT/2000/XP)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 4 - Beta

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190. CodonW - CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. It was written in ANSI compliant C. See the README file for more information.

Click here to download.  
  • Topic: Bio-Informatics
  • User Interface: Console/Terminal
  • Translations: English
  • Programming Language: C
  • Operating System: 32-bit MS Windows (NT/2000/XP), All POSIX (Linux/BSD/UNIX-like OSes), OS X
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 5 - Production/Stable

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191. Collaborative Computing Project for NMR - Collaborative Computing Project for NMR (CCPN)

Click here to download.  
  • Topic: Bio-Informatics, Chemistry
  • User Interface: Tk
  • Translations: English
  • Programming Language: Python, C, Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL), GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Science/Research, Information Technology
  • Development Status: 5 - Production/Stable

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192. Color Deconvolution for TMA images - This is a collection of ImageJ macros (scripts) for performing color deconvolution and analysis of immunohistochemistry (IHC) staining on tissue microarray (TMA) images

Click here to download.  
  • Topic: Bio-Informatics, Medical Science Apps.
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Mozilla Public License 1.0 (MPL)
  • Intended Audience: Science/Research
  • Development Status: 5 - Production/Stable

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193. Comparative Map and Trait Viewer - A comparative map and trait visualization framework enabling visual integration of genomic data from disparate data sources and allowing rich client-side interactivity and manipulation. Extensible through plugins for new datasources and algorithms.

Click here to download.  
  • Topic: Bio-Informatics, User Interfaces
  • User Interface: Java Swing
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Academic Free License (AFL)
  • Intended Audience: End Users/Desktop, Science/Research
  • Development Status: 4 - Beta

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194. CoMPAS Pro - Comprehensive Meta Prediction and Annotation Services for Proteins: The new all-in-one prediction tool that can be easily extended to include any SOAP/WSDL-enabled prediction servers. A concise user interface lets you use the results instantly.

Click here to download.  
  • Topic: Molecular Science, Medical Science Apps., Bio-Informatics
  • User Interface: Java Swing
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Academic Free License (AFL), GNU General Public License (GPL), Apache Software License, Apache License V2.0
  • Intended Audience: Advanced End Users, Healthcare Industry, Information Technology, Education, End Users/Desktop, Science/Research
  • Development Status: 4 - Beta

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195. Complex Query Engine - Complex Query Engine (CQE) is a Python program that allows one to query EnsMart databases using complex boolean queries. One may add local data sources via a plugin mechanism.


  • Topic: Bio-Informatics
  • User Interface: Tk
  • Programming Language: Python
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Science/Research
  • Development Status: 4 - Beta
  • Database Environment: Python Database API

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196. Component Framework / GINY Graph Library - CSBI is a component based framework that allows for inter-component data sharing and access. GINY is an Open Source Graph Library.

Click here to download.  
  • Topic: Software Development, Front-Ends, Bio-Informatics
  • Translations: English
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language), Solaris, Linux, All 32-bit MS Windows (95/98/NT/2000/XP), All POSIX (Linux/BSD/UNIX-like OSes)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: End Users/Desktop, Developers, Science/Research
  • Development Status: 4 - Beta

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197. Comprehensive Microbial Resource (CMR) - The Comprehensive Microbial Resource (CMR) is a free website used to display information on all of the publicly available, complete prokaryotic genomes.


  • Topic: Bio-Informatics
  • User Interface: Web-based
  • Programming Language: Perl
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Artistic License
  • Intended Audience: Healthcare Industry
  • Development Status: 5 - Production/Stable
  • Database Environment: Perl DBI/DBD

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198. Computational Intelligence Library - CILib is a framework for developing Computational Intelligence software in swarm intelligence, evolutionary computing, neural networks, artificial immune systems, fuzzy logic and robotics.

Click here to download.  
  • Topic: Artificial Intelligence, Bio-Informatics, Robotics, Genetic Algorithms
  • Translations: English
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Developers, Education, Science/Research
  • Development Status: 4 - Beta

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199. computer - Computer is a speech recognition and response system. Think about the Computer from Star Trek TNG: "Computer... change channel to Sci-Fi!" "Computer... what is the square root of eight?" That kind of thing.


  • Topic: Human Machine Interfaces, Bio-Informatics, Intelligent Agents, Subversion
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Development Status: 1 - Planning
  • Database Environment: Project is a database abstraction layer (API), Other API

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200. Conrad CRF Engine & Gene Caller - Conrad is both a high performance Conditional Random Field engine which can be applied to a variety of machine learning problems and a specific set of models for gene prediction using semi-Markov CRFs.

Click here to download.  
  • Topic: Artificial Intelligence, Algorithms, Bio-Informatics
  • User Interface: Java Swing, Command-line
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Mozilla Public License 1.1 (MPL 1.1)
  • Intended Audience: Science/Research
  • Development Status: 4 - Beta

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948 projects in result set. Projects sorted by: Ranking (Top Ranked First)
Select a page:   Previous   1   5   9   10   11   15   20   25   30   35   40   45   48   Next

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