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         Bio-Informatics
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948 projects in result set. Projects sorted by: Ranking (Top Ranked First)
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281. EToS - Spike Sorting System - EToS (Efficient Technology of Spike sorting; Extracellular recording To Spike trains) is an open-source system for spike sorting. EToS contains the programs of spike detection, feature extraction and clustering.


  • Topic: Mathematics, Information Analysis, Bio-Informatics
  • User Interface: Command-line
  • Programming Language: C++
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research

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282. eucb - A c++ program for trajectory analysis.


  • Topic: Bio-Informatics
  • User Interface: Command-line
  • Programming Language: C++
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 5 - Production/Stable

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283. EuroPhenome - EuroPhenome - a database for Mouse phenotype data

Click here to download.  
  • Topic: Bio-Informatics
  • User Interface: Web-based
  • Programming Language: PHP, Java
  • Operating System: Solaris, OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Other Audience, Science/Research
  • Development Status: 2 - Pre-Alpha
  • Database Environment: MySQL, Sybase, JDBC

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284. EvoGAP - EvoGap provides a link between unEvo and JGAP. unEvo is an Eclipse plug-in that provides support for the experimentation and research process on Evolutionary Algorithms. JGAP is an genetic algorithms package. Both packages are written in Java.


  • Topic: Bio-Informatics, Information Analysis, Frameworks, Artificial Intelligence, User Interfaces, Genetic Algorithms
  • User Interface: Eclipse
  • Translations: English
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language), WinNT, Win2K, Linux
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: End Users/Desktop
  • Development Status: 1 - Planning

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285. EvoGrid - The EvoGrid is an effort to develop a distributed simulation system to simulate potential pre-biotic chemical environments.


  • Topic: Bio-Informatics, Chemistry, Simulations
  • User Interface: Non-interactive (Daemon)
  • Programming Language: C, PHP
  • Operating System: Linux, OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 3 - Alpha
  • Database Environment: MySQL

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286. Evolution - Natural Evolution is a slow process. Today's computing technologies give us a chance to accelerate and explore it. The goal of this program is to provide hand-held evolution. I already created some versions using Mac OS X's Cocoa environment.

Click here to download.  
  • Topic: Bio-Informatics
  • User Interface: Cocoa (MacOS X)
  • Translations: English, German
  • Programming Language: Objective C
  • Operating System: OS X
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, Education
  • Development Status: 4 - Beta

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287. Evolution - Evolution will be a multiplayer game in which users will start with a simple bacteria, and through the process of evolution (using a proprietary \\\"DNA Clone\\\") the bacteria will later become a more evolved species. Evolution will occur randomly in th


  • Topic: Simulation, Artificial Intelligence, Bio-Informatics
  • Translations: English
  • Programming Language: Perl, Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Apache Software License
  • Intended Audience: Developers, End Users/Desktop
  • Development Status: 1 - Planning

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288. evolvenetworks - This is a C library with a set of functions that allow the user to evolve biological networks. The user provides a fitness function in C, and the library will do the rest. A few simulation algorithms and examples are included.


  • Topic: Bio-Informatics, Simulations
  • Programming Language: C
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • Intended Audience: Developers, Advanced End Users, Education, Science/Research
  • Development Status: 4 - Beta

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289. EvoPromoter - EvoPromoter is a JAVA application that detects promoter regions in aligned nucleotide sequences using phylogenetic hidden markov models.


  • Topic: Bio-Informatics
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • Development Status: 1 - Planning

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290. EvoRadical - EvoRadical was written in C. It implements a new codon-based likelihood models for detecting site-specific selection pressures acting on specific physicochemical properties.

Click here to download.  
  • Topic: Bio-Informatics
  • User Interface: Command-line
  • Programming Language: C
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 4 - Beta

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291. exonerate - exonerate is a generic tool for pairwise comparison and alignment of biological sequences.


  • Topic: Bio-Informatics
  • User Interface: Command-line
  • Translations: English
  • Programming Language: C
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License version 3.0 (GPLv3)
  • Intended Audience: Science/Research
  • Development Status: 5 - Production/Stable

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292. exor - Filters mutually exclusive alignment events and defines a position specific reciprocal best alignment set.


  • Topic: Bio-Informatics
  • User Interface: Command-line
  • Translations: English
  • Programming Language: Perl
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 4 - Beta

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293. Experimental EEG Viewer - A small Java program for reading, analysing, viewing and animating the data from an EEG machine during a psychology experiment.

Click here to download.  
  • Topic: Bio-Informatics, Medical Science Apps., Visualization
  • Translations: English
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: System Administrators
  • Development Status: 5 - Production/Stable

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294. Explorator - A platform for the integration of deterministic and stochastic models, for the simulation of the integrated models and for interactive exploration of the model behaviour.


  • Topic: Simulations, Bio-Informatics
  • User Interface: Eclipse, Java SWT, Command-line
  • Translations: English, German
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Eclipse Public License
  • Intended Audience: Advanced End Users, Education, Science/Research
  • Development Status: 1 - Planning

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295. EYPID_PROJECT - A logical model to describe and encode protein-protein interaction data into a machine-readable format. The model (in UML) must contain information about the state of the interactiong proteins before and after the interaction for pathways building.


  • Topic: XML, Bio-Informatics, Molecular Science
  • User Interface: Web-based
  • Translations: English
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License version 3.0 (GPLv3)
  • Intended Audience: Science/Research, Developers, Engineering
  • Development Status: 1 - Planning

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296. faif - C++ library for bioinformatics, small and fast; Naive Bayesian Classifier, DNA/RNA nucleotide second structure predictor, timeseries management, timeseries prediction, generic Evolutionary Algorithm, generic Hill Climbing algorithm and others.

Click here to download.  
  • Topic: Library, Bio-Informatics, Artificial Intelligence
  • Programming Language: C++
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Education, Developers
  • Development Status: 4 - Beta

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297. Family Jewels - Tools for comparative sequence analysis. Includes FamilyRelations (GUI) and a C++ toolkit/Python wrapper for doing fixed-width-window analyses.


  • Topic: Bio-Informatics
  • User Interface: X Window System (X11), Win32 (MS Windows), Cocoa (MacOS X)
  • Translations: English
  • Programming Language: Java, Python, C, C++
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: End Users/Desktop, Developers
  • Development Status: 4 - Beta, 5 - Production/Stable

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298. FASTA Conversion tool - A GUI tool (and Java library) to convert genetic sequences into FASTA format suitable for further processing.


  • Topic: Bio-Informatics
  • User Interface: Java Swing
  • Translations: English
  • Operating System: OS Independent (Written in an interpreted language)
  • License: zlib/libpng License
  • Intended Audience: Science/Research, End Users/Desktop
  • Development Status: 5 - Production/Stable

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299. FastEST - FastEST - A software tool for clustering Expressed Sequence Tags (EST). The motivation is to identify genes from DNA-fragments.

Click here to download.  
  • Topic: Bio-Informatics, Medical Science Apps., Distributed Computing
  • User Interface: Qt
  • Programming Language: C++
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: Qt Public License (QPL)
  • Intended Audience: Science/Research, Advanced End Users, Education
  • Development Status: 3 - Alpha

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300. fastSAP - fastSAP: fast Structure Alignment for Proteins


  • Topic: Bio-Informatics
  • User Interface: Web-based
  • Programming Language: PHP
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Academic Free License (AFL)
  • Intended Audience: Science/Research
  • Development Status: 3 - Alpha
  • Database Environment: MySQL

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948 projects in result set. Projects sorted by: Ranking (Top Ranked First)
Select a page:   Previous   1   5   10   14   15   16   20   25   30   35   40   45   48   Next

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