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         Bio-Informatics
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948 projects in result set. Projects sorted by: Ranking (Top Ranked First)
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21. ALinks - alinks is a set of POJO describing pedigree graphs.


  • Topic: Bio-Informatics
  • User Interface: Java Swing
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Artistic License
  • Intended Audience: Advanced End Users, Science/Research
  • Development Status: 1 - Planning
  • Database Environment: JDBC

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22. Ambit - chemical structures database - AMBIT consists of a MySQL database and functional modules providing storage of chemical compounds and allowing a variety of flexible structure, similarity and other queries. Written in Java, with the use of The Chemistry Development Kit.


  • Topic: Chemistry, Bio-Informatics, Dynamic Content
  • User Interface: Java Swing, Web-based
  • Translations: English
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Healthcare Industry, Education, End Users/Desktop, Information Technology, Science/Research, Advanced End Users
  • Development Status: 4 - Beta
  • Database Environment: MySQL, JDBC

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23. Amino Acid Finder - Ever got confused while remembering all the various physical properties of all the standard 20 amino acids? Then use Amino Acid Finder!! It has a built-in database and contains information about all the physical properties and lets you to search them


  • Topic: Bio-Informatics, Chemistry
  • User Interface: Java Swing
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Academic Free License (AFL)
  • Intended Audience: Science/Research, Education
  • Development Status: 5 - Production/Stable

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24. AMORSS: redox enzymes simulation system - This project is A Mitochondrial OxydoReduction Simulation System. It consists of two linked projects: a program for displaying and analysing large biomolecular systems (Floral) and a multi-agent simulator for biomolecular oxydoreduction systems (AMORSS).

Click here to download.  
  • Topic: Molecular Science, Chemistry, Bio-Informatics, Simulations
  • User Interface: OpenGL, Command-line, wxWidgets, Tk
  • Programming Language: Python
  • Operating System: OS Independent (Written in an interpreted language), All POSIX (Linux/BSD/UNIX-like OSes)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 3 - Alpha

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25. Analytical Data Interchange - This project provides open software for working with analytical instrumentation data using the ASTM "ANDI" standard.

Click here to download.  
  • Topic: Chemistry, Bio-Informatics
  • Translations: English
  • Programming Language: C
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Science/Research
  • Development Status: 5 - Production/Stable

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26. Analytical Information Markup Language - This project supports ASTM E13.15 "Analytical Data Magement" in it's work defining AnIML, an XML standard for representing, managing and interchanging analytical chemistry data.


  • Topic: Chemistry, Bio-Informatics
  • Translations: English
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Science/Research
  • Development Status: 4 - Beta
  • Database Environment: XML-based

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27. Anna - Anna is lightweight Java framework to build pipeline systems of any kind. It will take care of recurrent needs such as dependency management, data serialisation and synchronization as well as parallelization of execution.


  • Topic: Bio-Informatics, Frameworks
  • User Interface: Eclipse, Command-line
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Eclipse Public License, Apache License V2.0
  • Intended Audience: Developers
  • Development Status: 5 - Production/Stable

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28. AnnaF - AnnaF is an automatic gene annotation framework, that is used to do some automatic annotation for C. higginsianum. It was also tested on F. graminearum and should work well for fungi in general. AnnaF was build upon the pipeline framework Anna.


  • Topic: Bio-Informatics
  • User Interface: Command-line
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Apache License V2.0, Eclipse Public License, Mozilla Public License 1.1 (MPL 1.1)
  • Intended Audience: Advanced End Users, Non-Profit Organizations, Science/Research
  • Development Status: 5 - Production/Stable

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29. Annotated Gel Markup Language Project - Annotated Gel Markup Language is a simple markup language that is being proposed to markup data obtained by 2D gel electrophorosis.The goal of AGML is to enable proteomics research move into the browsing mode of searching through existing databases.

Click here to download.  
  • Topic: Bio-Informatics, Information Analysis
  • User Interface: Web-based
  • Translations: English
  • Programming Language: PHP, Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, Information Technology
  • Development Status: 4 - Beta

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30. AnnotationQuery - A command-line program to manipulate annotated genetic sequences (initially in EMBL format). The user supplies a pattern to identify which features or qualifiers to process. These can then be deleted, renamed etc


  • Topic: Bio-Informatics
  • Translations: English
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: End Users/Desktop, Science/Research
  • Development Status: 4 - Beta

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31. Anthill - Anthill is a framework to support the design, implementation and evaluation of P2P applications based on ideas such as multi-agent and evolutionary programming borrowed from the complex adaptive systems area.


  • Topic: Bio-Informatics
  • Translations: English
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Science/Research, Developers
  • Development Status: 2 - Pre-Alpha

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32. Antimony - Antimony is a human-readable, human-writable model definition language. libAntimony is a library that will read and write Antimony and SBML files and provides an API for other programs to import Antimony models into their own internal formats.

Click here to download.  
  • Topic: Simulations, Bio-Informatics
  • Translations: English
  • Programming Language: C++
  • Operating System: OS Independent (Written in an interpreted language)
  • License: BSD License
  • Intended Audience: Science/Research, Developers
  • Development Status: 5 - Production/Stable

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33. APBS - APBS is a software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales. <http://apbs.sf.net/>.

Click here to download.  
  • Topic: Chemistry, Physics, Mathematics, Molecular Science, Bio-Informatics, Simulations
  • User Interface: Command-line, Other toolkit
  • Translations: English
  • Programming Language: C, Fortran, Python
  • Operating System: Cygwin (MS Windows), 32-bit MS Windows (NT/2000/XP), All BSD Platforms (FreeBSD/NetBSD/OpenBSD/Apple Mac OS X), All POSIX (Linux/BSD/UNIX-like OSes), Linux, OS X, WinXP, SGI IRIX
  • License: MIT License, BSD License
  • Intended Audience: Science/Research, Education
  • Development Status: 5 - Production/Stable

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34. Aqua - AQUA is a suite of programs for Analyzing the QUAlity of biomolecular structures that were determined via NMR spectroscopy. AQUA was developed by Ton Rullmann and Jurgen Doreleijers in the NMR Spectroscopy Department, Utrecht.


  • Topic: Bio-Informatics
  • User Interface: Command-line, Web-based
  • Translations: English
  • Programming Language: AWK, C
  • Operating System: Linux, OS X
  • License: Academic Free License (AFL)
  • Intended Audience: Science/Research
  • Development Status: 5 - Production/Stable

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35. Arcadia - Arcadia is a light-weight, cross-platform, C++ desktop application designed for visualizing biological networks such as metabolic pathways.

Click here to download.  
  • Topic: Visualization, Bio-Informatics
  • User Interface: Qt
  • Translations: English
  • Programming Language: C++
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License version 3.0 (GPLv3)
  • Intended Audience: End Users/Desktop, Science/Research
  • Development Status: 4 - Beta

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36. Area-split proportional to pointinfluenc - Acre calculates growing-space or stand-density of trees and creats pictures of it. It can also be used to calculate weighted Voronoi-Diagrams (splits up an area to the neares point or to the point with the greatest influence at a certain place).

Click here to download.  
  • Topic: Bio-Informatics, Visualization
  • User Interface: Command-line
  • Translations: English
  • Programming Language: C
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 3 - Alpha

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37. array2net - Array2Net is a tool for visualizing gene co-expression network of expression profiling data.


  • Topic: Bio-Informatics
  • User Interface: Win32 (MS Windows), X Window System (X11)
  • Translations: English
  • Programming Language: Perl
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Artistic License
  • Intended Audience: Science/Research
  • Development Status: 2 - Pre-Alpha

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38. ArrayExpress Tab2MAGE - Tab2MAGE uses a flexible spreadsheet format for MIAME annotation of microarray experiments. Tab2MAGE spreadsheets may be submitted directly to ArrayExpress, or used to generate MAGE-ML for data exchange.

Click here to download.  
  • Topic: Bio-Informatics
  • User Interface: Command-line
  • Translations: English
  • Programming Language: Perl, Ruby
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Apache Software License
  • Intended Audience: Science/Research, Advanced End Users
  • Development Status: 5 - Production/Stable

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39. ArrayPipeline - ArrayPipeLine is a web-based Laboratory Information Management system, using MySQL, Perl CGI and R. It enables high-throughput analysis of microarray data, providing automation of data handling, and rapid creation and implementation of analysis pipelines

Click here to download.  
  • Topic: Front-Ends, CGI Tools/Libraries, Bio-Informatics
  • User Interface: Web-based
  • Translations: English
  • Programming Language: Perl
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, Developers, Advanced End Users
  • Development Status: 4 - Beta
  • Database Environment: Perl DBI/DBD

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40. arrayplex - ArrayPlex integrates various forms of microarray data from diverse annotation and primary data sources. It provides a programmatic framework (API set) for collaborative development and deploys as easy to maintain client-server architecture.

Click here to download.  
  • Topic: Bio-Informatics, Molecular Science
  • User Interface: Java Swing
  • Translations: English
  • Programming Language: Java
  • Operating System: All BSD Platforms (FreeBSD/NetBSD/OpenBSD/Apple Mac OS X), All POSIX (Linux/BSD/UNIX-like OSes), All 32-bit MS Windows (95/98/NT/2000/XP)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 4 - Beta
  • Database Environment: JDBC, PostgreSQL (pgsql)

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948 projects in result set. Projects sorted by: Ranking (Top Ranked First)
Select a page:   Previous   1   2   3   5   10   15   20   25   30   35   40   45   48   Next

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