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      Scientific/Engineering
         Bio-Informatics
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948 projects in result set. Projects sorted by: Ranking (Top Ranked First)
Select a page:   Previous   1   5   10   15   20   24   25   26   30   35   40   45   48   Next


481. libGenome - A C++ development library designed to make common operations on DNA and protein sequences easy. libGenome provides functionality to read, write, and manipulate sequence and annotation data in several file formats.


  • Topic: Bio-Informatics
  • Translations: English
  • Programming Language: C++
  • Operating System: OS X, All BSD Platforms (FreeBSD/NetBSD/OpenBSD/Apple Mac OS X), Linux, All 32-bit MS Windows (95/98/NT/2000/XP), All POSIX (Linux/BSD/UNIX-like OSes)
  • License: GNU General Public License (GPL)
  • Intended Audience: Developers, Science/Research
  • Development Status: 4 - Beta

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482. Libraries for electrophysiological data - This project houses software to analyze data acquired from electrophysiology experiments. Currently, we have an Octave/MATLAB program to analyze electroneurogram traces of coupled oscillators, and a Perl library for the analysis of voltage trace data.

Click here to download.  
  • Topic: Bio-Informatics, Information Analysis
  • Translations: English
  • Programming Language: Perl, MATLAB
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 4 - Beta

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483. LibSEDML: Sharing Simulation Experiments - This project hosts a library and tools for sharing simulation experiments encoded using SED-ML.


  • Topic: Data Formats, Bio-Informatics, Algorithms
  • User Interface: Web-based, Qt, Command-line
  • Programming Language: C#
  • Operating System: All POSIX (Linux/BSD/UNIX-like OSes), All 32-bit MS Windows (95/98/NT/2000/XP), 64-bit MS Windows, OS X
  • License: BSD License
  • Intended Audience: Advanced End Users, Developers, End Users/Desktop
  • Development Status: 4 - Beta

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484. Life Science Identifier (LSID) Spec - Life Science Identifier (LSID) Specification is a globally unique identifying scheme for information resources on the life sciences domain. It is based on Internet standards such as DNS, URN, HTTP, RDF, SOAP, WSDL, and web services.

Click here to download.  
  • Topic: Ecosystem Sciences, Bio-Informatics
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: Common Public License 1.0
  • Intended Audience: Information Technology, Non-Profit Organizations, Science/Research, Developers
  • Development Status: 1 - Planning

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485. Lightweight Genome Viewer (lwgv) - The project is for developing libraries for visualizing biological sequence data on the web. The libraries are written in C and currently use a language (lex/yacc) based front end for presenting features on genomes, contigs, or any type of sequence.

Click here to download.  
  • Topic: Bio-Informatics, Visualization
  • User Interface: Web-based
  • Translations: English
  • Programming Language: C
  • Operating System: Linux, OS X, All POSIX (Linux/BSD/UNIX-like OSes)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, Developers, Information Technology
  • Development Status: 4 - Beta

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486. LIMPort Sys - LIMPortSys is a python cgi project providing web-based laboratory notes collecting, searching and analysis services. Based on a flexible template and XML as record format, this project could be considered as a way to integrate lab information.


  • Topic: Bio-Informatics
  • User Interface: Web-based
  • Translations: English
  • Programming Language: Python
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Python Software Foundation License
  • Intended Audience: Science/Research
  • Development Status: 1 - Planning
  • Database Environment: XML-based

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487. LineageEvolver - LineageEvolver is a simulation system for molecular evolution. Sequence evolution is simulated using modular processes such as substitutions, gene duplication/death, horizontal gene transfer, and more.

Click here to download.  
  • Topic: Bio-Informatics, Simulations, Molecular Science
  • User Interface: Command-line
  • Translations: English
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, Advanced End Users, Developers
  • Development Status: 4 - Beta

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488. Linked Metabolites - A GUI-based search tool that allows the exploration of the relationships between Metabolites.

Click here to download.  
  • Topic: Bio-Informatics
  • Programming Language: Python
  • Operating System: WinXP, OS X, Linux
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 3 - Alpha

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489. LOligoLD - LOligoLD: Large-scale Oligonucleotide microarray Layout and Design


  • Topic: Bio-Informatics
  • User Interface: Java Swing, Command-line
  • Translations: English
  • Programming Language: Java
  • Operating System: OS Portable (Source code to work with many OS platforms), OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Healthcare Industry, Advanced End Users
  • Development Status: 2 - Pre-Alpha

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490. LookSeq - LookseQ is a JavaScript-based viewer for DNA sequencing read alignments, supporting both capillary and short-read technologies.


  • Topic: Bio-Informatics
  • User Interface: Web-based
  • Translations: English
  • Programming Language: JavaScript, Perl
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, Healthcare Industry
  • Development Status: 4 - Beta
  • Database Environment: Perl DBI/DBD

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491. lr3 - A software package for superposition of binding sites, clustering for common amino acids in this binding sites and a search algorithm to screen novel proteins for the occurrence of such a binding site on the surface.


  • Topic: Chemistry, Medical Science Apps., Molecular Science, Bio-Informatics
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)

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492. lrrr - Extraction of binding sites of ligands and search for unknown binding sites on apoproteins. Some call it docking. Some call it binding site detections. Some call it knowledge based.

Click here to download.  
  • Topic: Molecular Science, Bio-Informatics
  • Translations: English
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 4 - Beta

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493. LSHTM library - Genetic epidemiology library from London School of Hygiene and Tropical Medicine.


  • Topic: Bio-Informatics, Medical Science Apps.
  • Translations: English
  • Programming Language: Assembly, C++
  • Operating System: All POSIX (Linux/BSD/UNIX-like OSes), OS Independent (Written in an interpreted language), BeOS, All 32-bit MS Windows (95/98/NT/2000/XP)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, Developers, Education, Healthcare Industry
  • Development Status: 4 - Beta

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494. LSID (Life Science Identifier) - Life Science Identifier (LSID) resolution protocol, to locate biologically significant data over a network, within middle-ware providing a client A.P.I. for Life Science applications, and server software, for Industry data providers.

Click here to download.  
  • Topic: Bio-Informatics, Medical Science Apps.
  • Programming Language: Java, Perl, C++
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Common Public License 1.0
  • Intended Audience: Developers, Science/Research, Healthcare Industry, Information Technology, Government, Non-Profit Organizations
  • Development Status: 6 - Mature, 5 - Production/Stable

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495. LSM Stack Browser & 3D Plotter - A software tool enabling the user to browse through an image stack created by a confocal microscope. Points can be plotted through the stack, producing a digital 3D representation, which can be viewed in 3D and compared with other plots.


  • Topic: Research, 3D Rendering, Bio-Informatics
  • User Interface: Java Swing, Java AWT
  • Translations: English
  • Programming Language: Java
  • Operating System: 32-bit MS Windows (NT/2000/XP), All BSD Platforms (FreeBSD/NetBSD/OpenBSD/Apple Mac OS X), OS Independent (Written in an interpreted language), All POSIX (Linux/BSD/UNIX-like OSes)
  • License: Academic Free License (AFL)
  • Intended Audience: Advanced End Users, Education, Information Technology, Science/Research
  • Development Status: 3 - Alpha

Rank/Activity Percentile
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496. LSystem3D - Experimental Lindenmayer System generator, in 3D using OpenGL. Used for modeling the fractal growth processes of plants.

Click here to download.  
  • Topic: Visualization, Simulations, Mathematics, Bio-Informatics, 3D Modeling
  • User Interface: Other toolkit, OpenGL
  • Translations: English
  • Programming Language: C++
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Other Audience, Advanced End Users
  • Development Status: 3 - Alpha

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497. LutefiskXP - LutefiskXP is ANSI C compliant software used to perform de novo peptide sequencing from tandem mass spectra.

Click here to download.  
  • Topic: Bio-Informatics
  • User Interface: Command-line, Console/Terminal
  • Translations: English
  • Programming Language: C
  • Operating System: OS X, Solaris, Win2K, WinXP, WinNT
  • License: GNU General Public License (GPL)
  • Intended Audience: Advanced End Users, Science/Research
  • Development Status: 5 - Production/Stable

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498. Macromolecular mass spectra analysis - SOMMS is an analysis program for mass spectra intended for bio-informatics research. Its goal is to relate theoretical spectra with raw data. A previous version, accompanying an article published in Rapid Comm. in Mass Spectrometry, was written in Perl.


  • Topic: Bio-Informatics
  • User Interface: Java AWT, Java Swing
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Science/Research
  • Development Status: 5 - Production/Stable

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499. Madeline 2.0 Pedigree Drawing Engine - The Madeline 2.0 Pedigree Drawing Engine is a pedigree drawing program designed to handle large and complex pedigrees with an emphasis on readability and aesthetics.


  • Topic: Medical Science Apps., Bio-Informatics, Presentation
  • User Interface: Console/Terminal
  • Programming Language: C++
  • Operating System: OS X, All POSIX (Linux/BSD/UNIX-like OSes)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, Healthcare Industry, System Administrators, Advanced End Users
  • Development Status: 4 - Beta
  • Database Environment: MySQL

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500. MAGE-TAB Utilities - The MAGE-TAB Utilities project provides a simple SDK for parsing, manipulating, visualizing and exporting data in MAGE-TAB format. Early versions of the API are initially being developed in Perl.

Click here to download.  
  • Topic: Bio-Informatics
  • User Interface: Command-line
  • Programming Language: Perl
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, Developers
  • Development Status: 4 - Beta
  • Database Environment: Project is a database abstraction layer (API), Other API

Rank/Activity Percentile
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948 projects in result set. Projects sorted by: Ranking (Top Ranked First)
Select a page:   Previous   1   5   10   15   20   24   25   26   30   35   40   45   48   Next

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