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280 projects in result set. Projects sorted by: Ranking (Top Ranked First)
Select a page:   1   2   5   10   14   Next


1. 3DMolvis - 3DMolvis is a tool designed to make easy learning of basic structure and function of biological molecules.

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2. ABFF - Project for develop force fields with using ab-initio calculations

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3. aCell - a framework to build data-driven models of biological cells

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4. Adaptive Biasing Force - This is an implementation of the adaptive biasing force method (ABF) in NAMD. The code for ABF was developed by Eric Darve, Stanford University. ABF is a method created by E. Darve and A. Pohorille to calculate the free energy of bio-molecules.

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5. Algorithms in Spectroscopy - The aim of the project is to provide open source collection of algorithms in the field of spectroscopy: data handling and processing, modeling and artificial intelligence tools.

Click here to download.  
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6. Ambit - chemical structures database - AMBIT consists of a MySQL database and functional modules providing storage of chemical compounds and allowing a variety of flexible structure, similarity and other queries. Written in Java, with the use of The Chemistry Development Kit.

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7. Amino Acid Finder - Ever got confused while remembering all the various physical properties of all the standard 20 amino acids? Then use Amino Acid Finder!! It has a built-in database and contains information about all the physical properties and lets you to search them

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8. AMORSS: redox enzymes simulation system - This project is A Mitochondrial OxydoReduction Simulation System. It consists of two linked projects: a program for displaying and analysing large biomolecular systems (Floral) and a multi-agent simulator for biomolecular oxydoreduction systems (AMORSS).

Click here to download.  
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9. Analytical Data Interchange - This project provides open software for working with analytical instrumentation data using the ASTM "ANDI" standard.

Click here to download.  
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10. Analytical Information Markup Language - This project supports ASTM E13.15 "Analytical Data Magement" in it's work defining AnIML, an XML standard for representing, managing and interchanging analytical chemistry data.

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11. APBS - APBS is a software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales. <http://apbs.sf.net/>.

Click here to download.  
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12. Ascalaph Graphics - Molecular Dynamics and Molecular Graphics program. Molecular model builder. Interface with the MDynaMix http://www.mmk.su.se/~sasha/mdynamix/

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13. AutoDock Software in Parallel with GPUs - Using the CUDA API this project modifies the AutoDock software to run in parallel on NVIDIA GPUs. Users will be able to download and compile the code and use AutoDock on CUDA capable Graphics Cards. Autodock is located at http://autodock.scripps.edu/

Click here to download.  
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14. Avogadro - Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science and related areas. It offers a flexible rendering framework and a powerful plugin architecture.

Click here to download.  
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15. BasicLife - Basic life is an application that desires to simulate basic life based on some basic chemistry/physics rules. This environment provides particles that can bond, vibrate, react, etc. in order to create basic cells

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16. bc_scatterplot - bc_scatterplot is a scatterplot plugin for the bioclipse project

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17. Bika open source LIS/LIMS - Bika combines web content management and workflow processing for a one-stop web-based LIMS (Laboratory Information Management System) · Built in Plone · Professionally supported · Making waves · bi:ka (Zulu): tell it as it is

Click here to download.  
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18. BINViz - BINViz(Bidirectional Interactive Network Visualization) is a JavaScript library for network and graph visualization. The goal of this tool is to provide a better way to visualize complex graphical models and the underlying data in a web-based environment

Click here to download.  
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19. Bioclipse - An open source workbench for chemo- and bioinformatics built on the Eclipse Rich Client Platform (RCP).

Click here to download.  
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20. Biological Network Analyzer - Workbench for visualizing biological networks (regulatory, interaction, and metabolic). Can be used as a front-end for BN++ databases, but also as stand-alone tool.

Click here to download.  
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280 projects in result set. Projects sorted by: Ranking (Top Ranked First)
Select a page:   1   2   5   10   14   Next

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