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         Chemistry
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280 projects in result set. Projects sorted by: Ranking (Top Ranked First)
Select a page:   1   2   5   10   14   Next


1. 3DMolvis - 3DMolvis is a tool designed to make easy learning of basic structure and function of biological molecules.


  • Topic: Chemistry
  • User Interface: Qt
  • Translations: English, Spanish
  • Programming Language: C++
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Education
  • Development Status: 4 - Beta

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2. ABFF - Project for develop force fields with using ab-initio calculations


  • Topic: Molecular Science, Chemistry
  • Programming Language: C++
  • Operating System: All 32-bit MS Windows (95/98/NT/2000/XP), 64-bit MS Windows, OS Portable (Source code to work with many OS platforms)
  • License: Academic Free License (AFL)
  • Intended Audience: Science/Research
  • Development Status: 2 - Pre-Alpha

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3. aCell - a framework to build data-driven models of biological cells


  • Topic: Bio-Informatics, Chemistry, Physics
  • Translations: English
  • Programming Language: Python
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, Healthcare Industry
  • Development Status: 1 - Planning

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4. Adaptive Biasing Force - This is an implementation of the adaptive biasing force method (ABF) in NAMD. The code for ABF was developed by Eric Darve, Stanford University. ABF is a method created by E. Darve and A. Pohorille to calculate the free energy of bio-molecules.


  • Topic: Chemistry
  • User Interface: Console/Terminal
  • Programming Language: C++
  • Operating System: All 32-bit MS Windows (95/98/NT/2000/XP), All BSD Platforms (FreeBSD/NetBSD/OpenBSD/Apple Mac OS X), All POSIX (Linux/BSD/UNIX-like OSes), OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Advanced End Users
  • Development Status: 2 - Pre-Alpha

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5. Algorithms in Spectroscopy - The aim of the project is to provide open source collection of algorithms in the field of spectroscopy: data handling and processing, modeling and artificial intelligence tools.

Click here to download.  
  • Topic: Artificial Intelligence, Mathematics, Information Analysis, Chemistry
  • User Interface: Console/Terminal, Java Swing
  • Programming Language: Java, C#, C++
  • Operating System: OS Independent (Written in an interpreted language), OS Portable (Source code to work with many OS platforms)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Education, Science/Research, Advanced End Users
  • Development Status: 2 - Pre-Alpha

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6. Ambit - chemical structures database - AMBIT consists of a MySQL database and functional modules providing storage of chemical compounds and allowing a variety of flexible structure, similarity and other queries. Written in Java, with the use of The Chemistry Development Kit.


  • Topic: Chemistry, Bio-Informatics, Dynamic Content
  • User Interface: Java Swing, Web-based
  • Translations: English
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Healthcare Industry, Education, End Users/Desktop, Information Technology, Science/Research, Advanced End Users
  • Development Status: 4 - Beta
  • Database Environment: MySQL, JDBC

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7. Amino Acid Finder - Ever got confused while remembering all the various physical properties of all the standard 20 amino acids? Then use Amino Acid Finder!! It has a built-in database and contains information about all the physical properties and lets you to search them


  • Topic: Bio-Informatics, Chemistry
  • User Interface: Java Swing
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Academic Free License (AFL)
  • Intended Audience: Science/Research, Education
  • Development Status: 5 - Production/Stable

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8. AMORSS: redox enzymes simulation system - This project is A Mitochondrial OxydoReduction Simulation System. It consists of two linked projects: a program for displaying and analysing large biomolecular systems (Floral) and a multi-agent simulator for biomolecular oxydoreduction systems (AMORSS).

Click here to download.  
  • Topic: Molecular Science, Chemistry, Bio-Informatics, Simulations
  • User Interface: OpenGL, Command-line, wxWidgets, Tk
  • Programming Language: Python
  • Operating System: OS Independent (Written in an interpreted language), All POSIX (Linux/BSD/UNIX-like OSes)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 3 - Alpha

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9. Analytical Data Interchange - This project provides open software for working with analytical instrumentation data using the ASTM "ANDI" standard.

Click here to download.  
  • Topic: Chemistry, Bio-Informatics
  • Translations: English
  • Programming Language: C
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Science/Research
  • Development Status: 5 - Production/Stable

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10. Analytical Information Markup Language - This project supports ASTM E13.15 "Analytical Data Magement" in it's work defining AnIML, an XML standard for representing, managing and interchanging analytical chemistry data.


  • Topic: Chemistry, Bio-Informatics
  • Translations: English
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Science/Research
  • Development Status: 4 - Beta
  • Database Environment: XML-based

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11. APBS - APBS is a software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales. <http://apbs.sf.net/>.

Click here to download.  
  • Topic: Chemistry, Physics, Mathematics, Molecular Science, Bio-Informatics, Simulations
  • User Interface: Command-line, Other toolkit
  • Translations: English
  • Programming Language: C, Fortran, Python
  • Operating System: Cygwin (MS Windows), 32-bit MS Windows (NT/2000/XP), All BSD Platforms (FreeBSD/NetBSD/OpenBSD/Apple Mac OS X), All POSIX (Linux/BSD/UNIX-like OSes), Linux, OS X, WinXP, SGI IRIX
  • License: MIT License, BSD License
  • Intended Audience: Science/Research, Education
  • Development Status: 5 - Production/Stable

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12. Ascalaph Graphics - Molecular Dynamics and Molecular Graphics program. Molecular model builder. Interface with the MDynaMix http://www.mmk.su.se/~sasha/mdynamix/


  • Topic: Research, Chemistry, Molecular Science
  • User Interface: OpenGL, Qt
  • Translations: English
  • Programming Language: C++, Fortran
  • Operating System: OS Portable (Source code to work with many OS platforms), Linux, WinXP, Windows 7
  • License: GNU General Public License (GPL)
  • Intended Audience: Advanced End Users, Developers, Education, Science/Research, Non-Profit Organizations
  • Development Status: 5 - Production/Stable

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13. AutoDock Software in Parallel with GPUs - Using the CUDA API this project modifies the AutoDock software to run in parallel on NVIDIA GPUs. Users will be able to download and compile the code and use AutoDock on CUDA capable Graphics Cards. Autodock is located at http://autodock.scripps.edu/

Click here to download.  
  • Topic: Molecular Science, Medical Science Apps., Chemistry, Bio-Informatics
  • User Interface: Console/Terminal, Command-line
  • Translations: English
  • Programming Language: C, C++
  • Operating System: All BSD Platforms (FreeBSD/NetBSD/OpenBSD/Apple Mac OS X), All POSIX (Linux/BSD/UNIX-like OSes)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, Healthcare Industry, Education, End Users/Desktop, Advanced End Users, Developers
  • Development Status: 4 - Beta

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14. Avogadro - Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science and related areas. It offers a flexible rendering framework and a powerful plugin architecture.

Click here to download.  
  • Topic: Molecular Science, Chemistry, Visualization
  • User Interface: OpenGL, Qt
  • Translations: English, German, French, Italian, Spanish, Chinese (Simplified), Catalan, Chinese (Traditional), Russian, Brazilian Portuguese
  • Programming Language: C++, Python
  • Operating System: OS X, Linux, 32-bit MS Windows (NT/2000/XP), All POSIX (Linux/BSD/UNIX-like OSes), OS Portable (Source code to work with many OS platforms), WinXP
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, End Users/Desktop, Education, Advanced End Users
  • Development Status: 5 - Production/Stable

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15. BasicLife - Basic life is an application that desires to simulate basic life based on some basic chemistry/physics rules. This environment provides particles that can bond, vibrate, react, etc. in order to create basic cells


  • Topic: Visualization, Simulations, Chemistry, Bio-Informatics
  • User Interface: Java Swing
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, Developers
  • Development Status: 3 - Alpha

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16. bc_scatterplot - bc_scatterplot is a scatterplot plugin for the bioclipse project


  • Topic: Chemistry, Bio-Informatics
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Eclipse Public License
  • Development Status: 3 - Alpha

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17. Bika open source LIS/LIMS - Bika combines web content management and workflow processing for a one-stop web-based LIMS (Laboratory Information Management System) · Built in Plone · Professionally supported · Making waves · bi:ka (Zulu): tell it as it is

Click here to download.  
  • Topic: Chemistry, Earth Sciences, Medical Science Apps.
  • User Interface: Web-based
  • Translations: Afrikaans, English, Dutch, Portuguese, Spanish, Italian
  • Programming Language: Python, Zope
  • Operating System: OS Independent (Written in an interpreted language), OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, Healthcare Industry, Manufacturing, Government, Non-Profit Organizations
  • Development Status: 5 - Production/Stable, 6 - Mature
  • Database Environment: Python Database API

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18. BINViz - BINViz(Bidirectional Interactive Network Visualization) is a JavaScript library for network and graph visualization. The goal of this tool is to provide a better way to visualize complex graphical models and the underlying data in a web-based environment

Click here to download.  
  • Topic: Chemistry, Visualization, Bio-Informatics, Viewers, Internet
  • User Interface: Project is a user interface (UI) system
  • Translations: English
  • Programming Language: JavaScript
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Developers
  • Development Status: 3 - Alpha

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19. Bioclipse - An open source workbench for chemo- and bioinformatics built on the Eclipse Rich Client Platform (RCP).

Click here to download.  
  • Topic: Bio-Informatics, Chemistry, Visualization, Frameworks, Algorithms, Molecular Science
  • User Interface: Java SWT, Eclipse
  • Translations: English
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Eclipse Public License
  • Intended Audience: Science/Research, Healthcare Industry, End Users/Desktop
  • Development Status: 4 - Beta, 5 - Production/Stable
  • Database Environment: JDBC

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20. Biological Network Analyzer - Workbench for visualizing biological networks (regulatory, interaction, and metabolic). Can be used as a front-end for BN++ databases, but also as stand-alone tool.

Click here to download.  
  • Topic: Molecular Science, Information Analysis, Visualization, Chemistry, Bio-Informatics
  • User Interface: Plugins, Java Swing
  • Translations: English
  • Programming Language: Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU Library or Lesser General Public License (LGPL), GNU Library or "Lesser" General Public License version 3.0 (LGPLv3)
  • Intended Audience: Science/Research
  • Development Status: 3 - Alpha
  • Database Environment: MySQL, SQL-based

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280 projects in result set. Projects sorted by: Ranking (Top Ranked First)
Select a page:   1   2   5   10   14   Next

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