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162 projects in result set. Projects sorted by: Ranking (Top Ranked First)
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61. iMD - iMD: interactive/intuitive MD (Molecular Dynamics) simulation analysis.

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62. intron marker pipeline - IMP is an automated tool for intron-flanking primer design based off of Expressed Sequence Tags (ESTs). It's intended for use in species with limited to no genomic sequence data available.

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63. IsoFind - Project to create a set of algorithms which will identify and isolate mRNA isoforms through primer design for RT-PCR techniques.

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64. Janocchio - Janocchio is an application or applet for viewing 3D molecular structures and calculating NMR couplings and NOEs

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65. JChemPaint Applet and Swing Application - The JChemPaint Applet and Swing Application are Java programs for drawing 2D chemical structures like those found in most chemistry textbooks. It is based on the Chemistry Development Kit (cdk.sf.net). Downloads and source code repository can be foun

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66. JMolDraw - 2-D chemical structure drawing program

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67. JPhysChem modeling tool - JPhysChem - a mathematical modeling toolbox designed to provide an abstract layer and a comprehensive graphical front-end for general model building and specific modeling and data processing in the field of mass spectrometry and physical chemistry.

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68. kristy - the nice crystal viewer - Kristy will be a crystal visualization tool for scientific or educational use. We like to focus on crystal planes (e.g. the macroscopic surfaces) and surface charge calculations.

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69. LAMMPS - LAMMPS is a classical molecular dynamics simulator designed for parallel machines. It can model atomic, polymeric, biological, metallic, or granular systems using a variety of force fields and boundary conditions and can be easily modified and extended.

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70. LineageEvolver - LineageEvolver is a simulation system for molecular evolution. Sequence evolution is simulated using modular processes such as substitutions, gene duplication/death, horizontal gene transfer, and more.

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71. lr3 - A software package for superposition of binding sites, clustering for common amino acids in this binding sites and a search algorithm to screen novel proteins for the occurrence of such a binding site on the surface.

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72. lrrr - Extraction of binding sites of ligands and search for unknown binding sites on apoproteins. Some call it docking. Some call it binding site detections. Some call it knowledge based.

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73. mateo - Python scripts implementing new systematic approaches for the prediction of the properties of molecular materials. Version 1.0 starts with crystal densities: Acta Crystallographica, Section B, Vol. 63, pp.277-284 (2007).

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74. Mazridge - Mazridge is a free rigid body dynamics engine written in C/C++ for use as a library.

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75. MBPT (Molecular Biology Perl Tools) - MBPT (Molecular Biology Perl Tools) is a toolkit for Molecular Biologists that focuses mainly on sequence analysis/representation, as well as format conversions.

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76. MCDL - MCDL is a small Java molecular viewer/editor for chemical structures, stored in Modular Chemical Descriptor Language linear notation. Features include accurate structure diagram generation, and Kekule chemical structure creation from aromatic bond list.

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77. MDDriver - MDDriver is a library allowing a user to easily couple molecular visualisation tools with simulation code through a network. It allows to carry out interactive molecular dynamics, visualize simulation results and drive a simulation in interactive time.

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78. Meredys - Meredys (MEsoscopic REaction DYnamics Simulator) is a particle based stochastic simulation software designed to model and simulate reaction-diffusion systems. (http://www.ebi.ac.uk/compneur-srv/meredys.html)

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79. Metabolic Pathway Designer and Analyzer - Crude Metabolic Pathway Analysis visualization software. For a software engineering class.

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80. MitoMAS_membrane - Mito-MAS-m is a simulator of the mitochondrial inner membrane and the enzymatic complexes embedded in it, implementing a coarse-grained (CG) model of the molecules using rigid structures and Dissipative Particules Dynamics (DPD) as motion equation.

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162 projects in result set. Projects sorted by: Ranking (Top Ranked First)
Select a page:   Previous   1   2   3   4   5   6   7   8   9   Next

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